PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014566.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 209aa    MW: 23985.5 Da    PI: 9.2563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014566.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.45.1e-272911499
                  T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ ++++ +++++r+
  EcC014566.40  2 NRLVIPKQHAEKYfplgGDSVDKGLLLSFEDESGKFWRFRYSYWSSSQSYVLTKGWSRYVKEKRLDAGDVVFFERHRANGERIFIGWRRR 91
                  79**************955556889*************************************************88879999*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.015191IPR003340B3 DNA binding domain
SMARTSM010191.0E-12192IPR003340B3 DNA binding domain
CDDcd100173.15E-16185No hitNo description
PfamPF023627.9E-24291IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-24290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-32296IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
LNRLVIPKQH AEKYFPLGGD SVDKGLLLSF EDESGKFWRF RYSYWSSSQS YVLTKGWSRY  60
VKEKRLDAGD VVFFERHRAN GERIFIGWRR RGAAAAAQEG GRGGDGWGRR RALYSDSEHH  120
HHHHPQQPHH HPNFAYPTHQ GDDGPPMPYR PDCPHAGSDG RRPGNSKGLL RLFGVNMEYQ  180
VEEPEISTSE GSTLSPTHHH PSQHHQFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-38110426130DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.27e-69PREDICTED: B3 domain-containing protein At2g36080-like
RefseqXP_002530522.21e-68PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ9FNI33e-51Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLF6HKN61e-69F6HKN6_VITVI; Putative uncharacterized protein
TrEMBLB9SX031e-68B9SX03_RICCO; Transcription factor, putative
STRINGVIT_08s0007g02810.t013e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.24e-43B3 family protein